[Sophomore Biology: Organic Molecules Menu]


CHEMICALS OF LIFE:

1. WATER

2. CARBON BASED (ORGANIC) COMPOUNDS


IMPORTANT PROPERTIES of WATER:

1. UNIVERSAL SOLVENT.- water dissolves many substances

2. SURFACE TENSION

A. COHESIVE: water molecules show attractions to each other.

B. ADHESIVE: water molecules show attractions to other substances.

3. HIGH BOILING POINT: Good insulator-keeps body temp same as much energy needed to raise temp 1o degree Celsius.

4. GOOD COOLANT: Evaporation takes energy from skin, cooling it.

5. SOLID FORM (ICE) IS LESS DENSE THAN LIQUID FORM, SO ICE FLOATS. THE ICE CAN THEN ACT AS AN INSULATOR.

6. pH: dissociation (breaking into ions) of H2O into H+ and OH- H2O ----> H+ + OH-

A. ACID: more H+ ions (pH 0-7)

B. BASE: more OH- ions (pH 7-14)

C. NEUTRAL: H+ = OH- (pH =7)

D. BODY FLUIDS: pH = 7.4


ORGANIC MOLECULES

Carbon atoms bonded to at least 1 hydrogen atom. Frequently bonded to oxygen or other carbon atoms. Carbon is a unique element due to its ability to form covalent bonds that are strong and stable.

MONOMERS: Small organic molecules.

POLYMERS: Macromolecules (macro = large). Several monomers are bonded together to make larger polymers.


TYPES OF ORGANIC COMPOUNDS:

A. Proteins

B. Carbohydrates

C. Lipids

D. Nucleic Acids


PROTEINS

Large molecules that make up structures in cells. >50% of dry body wt..

Other importances: Enzymes, hormones, contractile fibers of muscles, O2 transport, toxins, etc.

1. MONOMER PROTEIN FORMS: AMINO ACIDS: Building blocks of all proteins. 20 types. All contain carboxyl group(COOH), amino group (NH2), & R group (variable). R group is the only difference for each a.a..

1. POLYMER FORMS: Called polypeptides (2 or more a.a.s bonded together). Peptide bond connects 2 a.a.s together. Peptide bond occurs between carboxyl group of one a.a. & amino group of 2nd a.a..

DEHYDRATION: Reaction to form a peptide bond, where H2O is released as bond forms.

aa + aa ----> protein + H20

DIPEPTIDE: 2 a.a. s linked together.

PROTEIN: Composed of one or more polypeptide chains linked together.

PROTEIN STRUCTURE: A protein's 3-D shape is dictated by its a.a. sequence. One change in a.a. sequence may change the whole structure of a protein as well as its function.


ENZYMES

ENZYME: Protein that acts as a catalyst. They control the reaction rates of most if not all reactions in an organism. All end in "ase" (Ex.- Catalase, lactase, amylase, etc.).

CATALYST: Any chemical that increases the rate of a chemical reaction. The catalyst is not changed or used up. Not all catalysts are enzymes.

SUBSTRATES: The reactants of an enzyme catalyzed rxn.

PRODUCTS: What the reaction makes.

ACTIVATION ENERGY: Amount of energy needed to raise substrate molecules to the transition state at which the reaction can occur. Enzymes lower the activation energy of reactions.

ACTIVE SITE: A small part of the enzyme is shaped such that the substrate/s can fit to it and thus cause the the reaction to occur more easily.

 

Slichter